sbc_config.get_SBC_config.RdThe configuration is a list of items.
cbc_quantilesa named list of site-specific quantile functions for each CBC of interest
cbc_abnormalsa named list of site-specific functions that flag values as abnormal or not
cbc_varsa list of names of CBC variables of interest, i.e. specific values of BASE_NAME
census_locationsa character vector locations that need to be used for modeling
c0a value to use in training for c0
min_inventorya value to use as offset to ensure a minimum threshold
history_windowhow many days of history to use in training, default 200
penalty_factorthe penalty factor in training, default 15
startthe day when the model evaluation begins, default 10
initial_expiry_datathe number of units expiring a day after prediction begins and one day after that, i.e. a 2-vector
initial_collection_datathe number of units to collect on the prediction day, a day after, and another day after, i.e. a 3-vector
data_folderfull path of location of raw data files
report_folderfull path of where reports should go, must exist
output_folderfull path of where processed output data should go, must exist
log_folderfull path of where logs should go, must exist
model_update_frequencyhow often to update the model, default 7 days
cbc_filename_prefixa character expression describing the prefix of daily CBC file name, this is combined with the date is substituted with the date in YYYY-dd-mm format
census_filename_prefixa character expression describing the prefix of daily census file name, this is combined with the date is substituted with the date in YYYY-dd-mm format
transfusion_filename_prefixa character expression describing the prefix of daily transfusion file name, this is combined with the date is substituted with the date in YYYY-dd-mm format
output_filename_prefixa character expression describing the prefix of daily output file name, this is combined with the date is substituted with the date in YYYY-dd-mm format
log_filename_prefixa character expression describing the prefix of log file name, this is combined with the date is substituted with the date in YYYY-dd-mm format
inventory_filename_prefixa character expression describing the prefix of the inventory file name, this is combined with the date is substituted with the date in YYYY-dd-mm format
get_SBC_config()
the value of package global sbc_config.
get_SBC_config()#> $cbc_quantiles #> $cbc_quantiles$HGB #> function (x) #> quantile(x, probs = 0.25, na.rm = TRUE) #> <environment: 0x7fb2b69b64e0> #> #> $cbc_quantiles$LYMAB #> function (x) #> quantile(x, probs = 0.25, na.rm = TRUE) #> <environment: 0x7fb2b69b64e0> #> #> $cbc_quantiles$MCH #> function (x) #> quantile(x, probs = 0.25, na.rm = TRUE) #> <environment: 0x7fb2b69b64e0> #> #> $cbc_quantiles$MCHC #> function (x) #> 32 #> <environment: 0x7fb2b69b64e0> #> #> $cbc_quantiles$MCV #> function (x) #> quantile(x, probs = 0.25, na.rm = TRUE) #> <environment: 0x7fb2b69b64e0> #> #> $cbc_quantiles$PLT #> function (x) #> 150 #> <environment: 0x7fb2b69b64e0> #> #> $cbc_quantiles$RBC #> function (x) #> 4.4 #> <environment: 0x7fb2b69b64e0> #> #> $cbc_quantiles$RDW #> function (x) #> 12 #> <environment: 0x7fb2b69b64e0> #> #> $cbc_quantiles$WBC #> function (x) #> quantile(x, probs = 0.25, na.rm = TRUE) #> <environment: 0x7fb2b69b64e0> #> #> $cbc_quantiles$HCT #> function (x) #> 40 #> <environment: 0x7fb2b69b64e0> #> #> #> $cbc_abnormals #> $cbc_abnormals$HGB #> function (x) #> x < 9 #> <environment: 0x7fb2b69b64e0> #> #> $cbc_abnormals$LYMAB #> function (x) #> x < 0.69 #> <environment: 0x7fb2b69b64e0> #> #> $cbc_abnormals$MCH #> function (x) #> x < 29 #> <environment: 0x7fb2b69b64e0> #> #> $cbc_abnormals$MCHC #> function (x) #> x < 32 #> <environment: 0x7fb2b69b64e0> #> #> $cbc_abnormals$MCV #> function (x) #> x < 87 #> <environment: 0x7fb2b69b64e0> #> #> $cbc_abnormals$PLT #> function (x) #> x < 150 #> <environment: 0x7fb2b69b64e0> #> #> $cbc_abnormals$RBC #> function (x) #> x < 4.4 #> <environment: 0x7fb2b69b64e0> #> #> $cbc_abnormals$RDW #> function (x) #> x < 11.5 #> <environment: 0x7fb2b69b64e0> #> #> $cbc_abnormals$WBC #> function (x) #> x > 10.3 #> <environment: 0x7fb2b69b64e0> #> #> $cbc_abnormals$HCT #> function (x) #> x < 34 #> <environment: 0x7fb2b69b64e0> #> #> #> $census_locations #> [1] "B1" "B2" "B3" #> [4] "C1" "C2" "C3" #> [7] "CAPR XFER OVERFL" "CATH PACU" "CDU-CLIN DEC UNIT" #> [10] "D1CC" "D1CS" "D2" #> [13] "D3" "DGR" "E1" #> [16] "E2-ICU" "E29-ICU" "E3" #> [19] "EMERGENCY DEPARTMENT" "F3" "FGR" #> [22] "G1" "G2P" "G2S" #> [25] "H1" "H2" #> #> $c0 #> [1] 30 #> #> $min_inventory #> [1] 30 #> #> $history_window #> [1] 200 #> #> $penalty_factor #> [1] 15 #> #> $start #> [1] 10 #> #> $initial_collection_data #> [1] 60 60 60 #> #> $initial_expiry_data #> [1] 0 0 #> #> $data_folder #> [1] "E:/platelet_predict_daily_data" #> #> $cbc_filename_prefix #> [1] "LAB-BB-CSRP-CBC_Daily%s-" #> #> $census_filename_prefix #> [1] "LAB-BB-CSRP-Census_Daily%s-" #> #> $transfusion_filename_prefix #> [1] "LAB-BB-CSRP-Transfused Product Report_Daily%s-" #> #> $inventory_filename_prefix #> [1] "Daily_Product_Inventory_Report_Morning_To_Folder%s-" #> #> $output_filename_prefix #> [1] "pip-output-%s.RDS" #> #> $log_filename_prefix #> [1] "SBCpip_%s.json" #> #> $model_update_frequency #> [1] 7 #> #> $cbc_vars #> [1] "HGB" "LYMAB" "MCH" "MCHC" "MCV" "PLT" "RBC" "RDW" "WBC" #> #> $report_folder #> [1] "E:/Blood_Center_Reports" #> #> $output_folder #> [1] "E:/Blood_Center_Output" #> #> $log_folder #> [1] "E:/Blood_Center_Logs" #>