Process all cbc files in a folder and generate qc reports

Process all cbc files in a folder and generate qc reports

process_all_cbc_files(data_folder,
  report_folder = file.path(dirname(data_folder),
  paste0(basename(data_folder), "_Reports")), cbc_abnormals, cbc_vars,
  pattern = "LAB-BB-CSRP-CBC*")

Arguments

data_folder	the folder containing the raw data
report_folder	the folder to write reports to, default is data_folder with "_Reports" appended. Must exist.
cbc_abnormals,	a named list of functions of a single vector returning TRUE for abnormal values
cbc_vars,	the names of fields to include; others are excluded
pattern	the pattern to distinguish CBC files, default "LAB-BB-CSRP-CBC*" appearing anywhere

Value

a combined dataset